SNP Profiles matching NA 232

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
2._POUND_2_/A
__CCGGCC_AACCAACC__AA_
3._POUND_2_/A
__CCGGCC_AACCAACC__AA_
4._POUND_2_/A
__CCGGCC_AACCAACC__AA_
5._POUND_2_/A
__CCGGCC_AACCAACC__AA_
6._POUND_2_/A
__CCGGCC_AACCAACC__AA_
7._POUND_2_/A
__CCGGCC_AACCAACC__AA_
8._POUND_2_/A
__CCGGCC_AA_AACC__AA_
9._POUND_25_/A
__CCGGCC_AA_AACC__AA_
10._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
11._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
12._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
13._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
14._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
15._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
16._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
17._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
18._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
19._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
21._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
22._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
23._NA_95
__ACGTCC_AACCAACC__AA_
24._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
25._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
29._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTGGGGAACCCCTTGGGGTTACGG
1._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
2._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
3._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
4._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
5._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
6._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
7._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
8._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
9._POUND_25_/A
AACCTTGGGGAA_CC_GG___GG
10._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
11._RUQ_877
AACC-GGGGAACCCCTTGGGGTTCCCG
12._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
13._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
14._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
15._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
16._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
17._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
18._RUQ_897
AACCCTGGGGAACCCCTTGGGGTTCCGG
19._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
20._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
21._RUQ_801
AACCCCGGGGAACCCCTTGGGGTTCCGG
22._RUQ_1587
AACCCCGGGGAACCCCTTGGGGTTCCGG
23._NA_95
AACCTTGGGGAA_CC_GG___CG
24._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
25._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
26._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
27._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
28._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
29._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
1._RUQ_1588
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
2._POUND_2_/A
_CCGG_CC___TT__TTCCAA
3._POUND_2_/A
_CCGG_CC___TT__TTCCAA
4._POUND_2_/A
_CCGG_CC___TT__TTCCAA
5._POUND_2_/A
_CCGG_CC___TT__TTCCAA
6._POUND_2_/A
_CCGG_CC___TT__TTCCAA
7._POUND_2_/A
_CCGG_CC___TT__TTCCAA
8._POUND_2_/A
_CCGG_CC___TT__TTCCAA
9._POUND_25_/A
_CCGG_CC___TT__TTCCAA
10._RUQ_515
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
11._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
12._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
13._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
14._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
15._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
16._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
17._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
18._RUQ_897
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
19._RUQ_1334
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
20._RUQ_468
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
21._RUQ_801
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
22._RUQ_1587
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
23._NA_95
_CTAG_CC___TT__TTCCAA
24._GC-01-101-5-18
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
25._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
26._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
27._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
28._GC-01-101-5-18
CCCCGGCCCCGGGGTT_TTCCTTGGAA
29._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA

Input profile: NA_232 RUQ_1504

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_710 RUQ_1588

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

4._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

5._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

9._POUND_25_/A

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

10._IMC_27 RUQ_515

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._CRU_100 RUQ_877

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

16._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

17._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._CRU_70 RUQ_897

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._NA_916 RUQ_1334

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_756 RUQ_468

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._NA_149 RUQ_801

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_702 RUQ_1587

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_95

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

24._NA_286 GC-01-101-5-18

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

25._POUND_5_/C GC-08-165-4-08

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._POUND_5_/C GC-08-165-4-08

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

27._POUND_5_/C GC-08-165-4-08

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._NA_286 GC-01-101-5-18

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

29._POUND_5_/C GC-08-165-4-08

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484